PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.013G268300.3
Common NameB456_013G268300
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family MYB_related
Protein Properties Length: 670aa    MW: 76462.1 Da    PI: 9.4273
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.013G268300.3genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding23.61.2e-07460501145
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                         + +WT+eE e  ++ v+q+G + W++   t+g  + + ++k+ w+
  Gorai.013G268300.3 460 KRPWTPEEYEMVKKFVEQHGRN-WRLLGDTLG--KHRHHVKDTWR 501
                         579*****************66.********9..67888998887 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500907.12455504IPR017877Myb-like domain
SMARTSM007171.2459506IPR001005SANT/Myb domain
SuperFamilySSF466893.74E-6460515IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.609.8E-9462512IPR009057Homeodomain-like
PfamPF139211.9E-10463520No hitNo description
PROSITE profilePS500906.632506572IPR017877Myb-like domain
SMARTSM007174508574IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.1E-6513573IPR009057Homeodomain-like
PROSITE profilePS500907.259574627IPR017877Myb-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 670 aa     Download sequence    Send to blast
MGKKMREKDG HKSENKQTEE VNSIEKEIDV LNGVPKSSNR DDDNNKIKDR TKKRKTEFDT  60
DKKESQNTHK KHKTSKDAVE EIPMETCLGG KENAEQESSK AMNLENNGEA KRVKKDKHKK  120
NRDEINAVAT VTETLKHSKK ESKKAHKKHK KSKDEVKEIS MESCKGGKKN TEQESSKVMN  180
LENNGEAKRV GKDKHKDKDG TNAVGTVTGT LEHSKKESPK AHKKSKDVVE EISMETCLGG  240
KENAEKESSK VVNLGNNGEA EKVREDKHKR KNKDGIDAVA TVTETFVHSK MQEPVETEVC  300
EKQKKKKKLE KVNGNVADDI AAMSSTTDKK GTGKKNSAGN ELERKKLRDI GGDDEAGNKR  360
KKKKSKSVEN DTDQVENATL KEKSKKVSFS DQVEVFPSMD DAKKDKEGFV KGDEGLNMVL  420
NCGSHKEVRR CWNEIQAAIP WRPVESVYNR AHVLFERDEK RPWTPEEYEM VKKFVEQHGR  480
NWRLLGDTLG KHRHHVKDTW RRISANAKKG QWSQDEYQKL FDLVNLDLCM KATQERKSKY  540
GMLRDNICWT AIGNKMETRA FVSCCSKWYR NLTSPMVAEG LWADVDDYRM LDALSSLDAC  600
CMEDVNWDNI LEHRSGDLCR KRWSQMVQRL GSNKNLSFAE QVDILAERYR PDMIEARETF  660
DSKQPVDLP*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1343363RKKLRDIGGDDEAGNKRKKKK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012463907.10.0PREDICTED: RNA polymerase I termination factor-like
TrEMBLA0A0D2U7N30.0A0A0D2U7N3_G
STRINGPOPTR_0003s16730.11e-129(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41020.11e-105MYB_related family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]